starfish: scalable pipelines for image-based transcriptomics¶
starfish is a Python library for analysis of image-based transcriptomics.
Starfish’s documentation also contains instructions on creating image-based transcriptomics processing pipelines, tutorials on running starfish using the API, and a worked example of contributing code to starfish. Finally, advanced users can examine the Data Structures and Help & Reference sections to learn more details about _starfish_ and its object models.
For questions, suggestions, or accolades, join the #starfish-users channel on the CZI Science Slack and say “hi!” or email the starfish team directly
To see the code or report a bug, please visit the github repository.
To see what improvements the developers have planned for starfish, please see the Roadmap.