{ "cells": [ { "cell_type": "code", "execution_count": null, "metadata": { "collapsed": false }, "outputs": [], "source": [ "%matplotlib inline" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "\n\n# Format SeqFISH Data\n\nThe following script formats SeqFISH data in SpaceTx Format.\nThis is a good example of:\n\n* converting 4D TIFFS (channel, z, y, x)\n* not hard coding tile shape (get shape from data)\n* parsing a codebook.csv and writing the SpaceTx Format codebook.json\n\n
This example is provided for illustrative purposes, demonstrating how the\n :py:class:`.TileFetcher` is used in practice. It will need to be adapted to meet\n the specific needs of your data.