Quick Start

Tutorial introducing first-time users to a full starfish pipeline.

Data Formatting

Several examples of how to format data into SpaceTx format from a variety of types of input data shapes and sizes, demonstrating the flexibility of TileFetcher.

Advanced Data Loading

Advanced data loading techniques allow for users to directly load data from any file format into starfish.

Example Pipelines

Starfish pipelines tailored for image data generated by groups using various image-based transcriptomics assays. When adapting these examples for other data sets, be cognizant that pipelines must be designed for the imaging system properties, sample characteristics, as well as the assay used.

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