How Tos — starfish documentation

How Tos¶

How Tos for using starfish classes, methods, and functions

Visualizing Data

Visualizing Data

Finding Spots with LocalMaxPeakFinder

Finding Spots with :py.LocalMaxPeakFinder

Plotting Intensity Distribution

Plotting Intensity Distribution

Showing Image of ImageStack Plane

Showing Image of ImageStack Plane

Finding Spots with TrackpyLocalMaxPeakFinder

Finding Spots with :py.TrackpyLocalMaxPeakFinder

Decoding Spots with SimpleLookupDecoder

Decoding Spots with :py.SimpleLookupDecoder

Clipping

Finding Spots with BlobDetector

Finding Spots with :py.BlobDetector

Clipping Value To Zero

Clipping Value To Zero

Decoding Spots with PerRoundMaxChannel

Decoding Spots with :py.PerRoundMaxChannel

Assessing SpotFindingResults

Assessing :py.SpotFindingResults

When to Use Each TraceBuildingStrategies

When to Use Each TraceBuildingStrategies

Clipping Percentile To Zero

Clipping Percentile To Zero

Matching Histograms

Matching Histograms

Decoding Spots with MetricDistance

Decoding Spots with :py.MetricDistance